Haven't worked on Winders in years, but dos command is still there and there is a command to display files recursively with a re-direct to a text file. Something like:
cd moodlecodedirectoryuntared
dir /s > allfiles.txt
There's your file listing. Print out.
Now on the server, do you have a tool that will list files recursively? Haven't used FTP in years either (scp better), but might have to see if your FTP app can do that ... AFTER the upload.
The name of that text file: allfilesafterupload.txt
Does Winders now have a 'diff' command? Google for that one. Once acquired, one could use that diff command/app in comparing the two text files.
In a fresh download of 24 code via git, for example, using the command line on a Mac located in the 24 code directory:
wc -l all24files.txt
23602 all24files.txt
In a fresh download of 24 code (.tgz), using the command line in the moodle directory created by extracting the tar ball:
wc -l all24dlfiles.txt
23362 all24dlfiles.txt
'spirit of sharing', Ken